Events during the timeskip

During a stage greeting Hideaki Anno give some information about the events which happen during the timeskip and the story he wished tell in Evangelion 3.0

The original story of 3.0 :

The movie Evangelion 3.0 shouldn't focus to shinji at all but on the events after the awakening of Evangelion 01 up to the liberation of Shinji from the tesseract. 

Events told by Hideaki Anno :

The following events were told by Hideaki Anno and thus can be considered as cannon to the rebuild franchise :

Gendo ousted from his position after Evangelion 01 awakening and Near Third impact

Kaworu and Kaji assume command in Gendo's absence

Kaworu and Kaji aid in the preservation of NERV and his staff, with each their own agendas

Gendo somehow reassumes command at NERV

Gendo uses SEELE, another battle occurs ( probably with the 11th or 12th angel )

Third impact occurs

Kaji dies to stop Third Impact

WILLE is born